Friday 17th November 2023 @ 8h30 AM
ENS Salle Jaurès - 29 rue d'Ulm 75005 Paris
(entrance at 24 rue Lhomond)
Biophysics, Pizza and Beers!
The Paris Biological Physics Community Day (PBPCD 2023),
this year at its 11th edition,
is a conference organized by young researchers in the Paris area
with the aim to bring together researchers in biological physics
and create an opportunity for sharing knowledge.
It's going to be a day of conviviality, we envision to have a dynamic and informal
atmosphere. In the program the talks of the invited speakers are
interleaved with short presentations by young investigators.
No fees: lunch, coffee breaks and
closing apéro included!
Just come at the Salle Jaurès, ENS.
Keynote Speakers
Sophie Marbach
Sorbonne Université, Paris
Andreas Mayer
University College London, London
Alfonso Perez-Escudero
Center for Integrative Biology, Toulouse
Severine Atis
Institut Pprime, Poitiers
Abstracts
Andreas Tiffeau-Mayer
Reading the T cell receptor code
The specificity of adaptive immune responses relies on the binding of
hyper-variable receptors to diverse ligands. Advances in the depth at
which the hyper-variable receptor loci can be sequenced provide
unprecedented resolution into the many-to-many mapping between receptors
and ligands. What does this data reveal about the sequence determinants
of specific binding? In my talk, I will discuss some of our recent
progress in addressing this question: First, I will introduce a
population genetics approach to infer correlation functions of
specificity on sequence space. Second, I will present our initial
attempts at using metric learning to learn which receptors recognize
common targets. I will conclude with some thoughts on how an ability to
read the T cell receptor code will change the way we track immune
responses to infection, vaccinations and cancer.
Alfonso Perez-Escudero
Optimal foraging in Caenorhabditis elegans: A simple rule from a complex dataset
Evolution is supposed to produce near-optimal organisms, but this optimality is often hidden behind the high complexity of biology.
Optimal animal behavior is particularly hard to study, given the extreme complexity of the nervous system and the diversity of environmental cues it can face.
We address this challenge on a simple and powerful model organism, the nematode Caenorhabditis elegans. Combining high-throughput experimental techniques, data analysis and modeling,
we aim to test the optimality of behavior with unprecedented accuracy, breadth and detail.
Severine Atis
Microbial growth and competition on liquid substrates
Turbulent mixing near ocean surfaces generates phytoplankton blooms with fractal spatial structures. This is but one example of how fluid flows interact with biological growth to shape populations and promote the formation of ecological niches with enhanced genetic heterogeneity.
Hydrodynamic transport can shape and reorganize populations across all scales, either mixing to uniformity or leading to the formation of differentiated structures. In the laboratory, microbial growth on agar plates has long been used to model how genetic spatial structure impacts evolution.
However, because the substrate is solid and the microbial population is not advected, these experiments only mimic range expansion on land. In this talk, I will discuss how we have addressed this problem by studying the growth and morphology of microbial colonies on the surface of a viscous substrate.
Combining experiments with numerical modeling, I will demonstrate that the positive feedback between flow and growth can lead to both colony fracture or microbial jetting phenomena, and dramatically impact the genetic segregation patterns. Our work thus introduces a controlled versatile system with which to study
the intricate interplay between hydrodynamics, growth and competition.
Location
Talks & Coffee Breaks:
ENS Paris,
Room Salle Jean Jaures
29 rue d'Ulm (Entrance, 24 rue Lhomond)
Lunch:
École Normale Supérieure,
Espace Curie
29 rue d'Ulm (Entrance, 24 rue Lhomond)
Apéro:
École Normale Supérieure,
Grand Hall
24 rue Lhomond
Organizers
A. Mazzolini1,
D. Mion1,
T. Tohme1,
X. Chen1,
A. Aragon1,
T. Germier3,
M-F. Abbate1,2,
P. Pereira1,2.
1LPENS Paris,
2Sanofi
3IJM
Acknowledgments
With the support of: Aleksandra WalczakLaboratoire de Physique Theorique, École Normale
Supérieure
Lauryn Cayol and Christine Chambon.