T Chapdelaine, V Hakim, A Triller, J Ranft and CG Specht (2021),
Reciprocal stabilization of glycine receptors and gephyrin scaffold proteins at inhibitory synapses,
Biophys J, 120, 805-817
A. Kulkarni, J. Ranft and V. Hakim (2020),
Synchronization, stochasticity and phase waves in neuronal networks with spatially-structured connectivity,
Front. Comput. Neurosci. 14, 569644
V. Hakim and J. Ranft (2020),
Lifetime of a structure evolving by cluster aggregation and particle loss, and
application to postsynaptic scaffold domains,
Phys Rev E 101 : 012411
pdf
G Bouvier, J Aljadeff, C Clopath, C Bimbard, J Ranft,
A Blot, J-P Nadal, N Brunel, V Hakim and B Barbour
(2018),
Cerebellar learning using perturbations,
eLife;7:e31599
J. Ranft*, L. G. Almeida*, P. C. Rodriguez, A Triller and V. Hakim (2017),
An aggregation-removal model for the formation and size determination
of post-synaptic scaffold domains,
PLoS Comput Biol 13(4): e1005516
V Pérez Schuster, A Kulkarni*, M Nouvian*, K Lygdas*, S A Romano,
A Jouary, M Dippopa, T Pietri, M Haudrechy, V Candat, J Boulanger-Weill,
V Hakim and G Sumbre (2016),
Sustained rhythmic brain activity underlies visual motion perception
in zebrafish,
Cell Reports 17, 1098-112
A Blot*, C de Solages*, S. Ostojic, G. Szapiro, V. Hakim and C. Léna (2016),
Time-invariant feed-forward inhibition of Purkinje cells in the cerebellar cortex in vivo,
J. Physiol.; doi: 10.1113/JP271518.
pdf
S. Ostojic, G Szapiro, E Schwartz, B. Barbour, N. Brunel and
V. Hakim (2015),
Neuronal morphology generates high-frequency firing resonance,
J. Neurosci. 35, 7056-68
pdf
N. Brunel, V. Hakim and M. J. E. Richardson (2014), Single neuron dynamics and computation,
Curr. Opin Neurobiol. 25, 149-155
pdf
S. Ostojic, N. Brunel and V. Hakim (2009),
How connectivity, background activity, and synaptic properties
shape the cross-correlations between spike trains,
J. Neurosci. 29, 10234-10253
pdf
S. Ostojic, N. Brunel and V. Hakim (2009),
Synchronization properties of networks of electrically coupled neurons in
the presence of noise and heterogeneities,
J. Comp. Neurosci. 26, 369-392
pdf
G. P. Dugué, N. Brunel, V. Hakim, E. Schwartz, M. Chat, M.
Lévesque, R. Courtemanche, C. Léna and S. Dieudonné (2009),
Electrical coupling mediates tunable low-frequency oscillations and resonance
in the cerebellar Golgi cell network,
Neuron 61, 126-139
pdf , Supplemental Material
pdf
A. Roxin, V. Hakim and N. Brunel (2008),
The statistics of repeating patterns of cortical activity can be reproduced
by a model network of stochastic binary neurons,
J. Neurosci. 28, 10734-10745
pdf , Supplemental Material
pdf
C. de Solages, G Szapiro, N. Brunel, V. Hakim, P.Isope, P. Buisseret,
C. Rousseau, B. Barbour and C. Léna (2008),
High-frequency organization and synchrony of activity in the Purkinje
cell layer of the cerebellum,
Neuron 58, 775-788
pdf , Supplemental Material
pdf
N. Brunel and V. Hakim (2008),
Sparsely synchronized neuronal oscillations,
Chaos 18, 015113
pdf
N. Brunel, V. Hakim, J.P. Nadal and B. Barbour (2007),
What can we learn from synaptic weight distributions?
Trends Neurosci. 28, 387-394
pdf
N. Brunel, V. Hakim, P.Isope, J.P. Nadal and B. Barbour (2004),
Optimal information storage and the distribution of synaptic weights: Perceptron versus Purkinje cell,
Neuron 43, 745-757
pdf , Supplemental Material
pdf
N. Brunel, V. Hakim and M. J. E. Richardson (2003),
Firing rate resonance in a generalized Integrate-and-Fire neuron with
subthreshold resonance
Phys. Rev. E67, 051916
ps , pdf
M. J. E. Richardson, N. Brunel and V. Hakim (2003),
From Subthreshold to Firing-Rate Resonance
J. Neurophysiol. 89, 2538-2554
pdf
N. Brunel and V. Hakim (1999),
Fast global oscillations in networks of integrate-and-fire
neurons with low firing rates,
Neural Computation 11, 1621-1671
ps ,
pdf
M.-L. Chabanol, V. Hakim and W.-J. Rappel (1997),
Collective chaos and noise in the globally coupled complex Ginzburg-Landau
equation,
Physica D 103, 273-293
pdf
V. Hakim and P Silberzan (2017),
Collective cell migration : a physics perspective,
Rep. Prog. Phys. 80, 076601.
M Santolini*, I Sakakibara*, M Gauthier, F Ribas-Aulinas, H Takahashi, T Sawasaki, V Mouly,
J-P Concordet, P-A Defossez, V Hakim and P Maire (2016),
MyoD reprogramming requires Six1 and Six4 homeo-proteins : genome-wide cis-regulatory module
analysis,
Nucleic Acids Research, gkw512.
N. Murisic, V. Hakim, I.G. Kevrekidis, S.Y. Shvartsman and B. Audoly (2015),
From discrete to continuum models of three-dimensional deformations in epithelial sheets,
Biophys J 109, 154-63,
pdf
V. Tarle, A. Ravasio, V. Hakim and N.S. Gov. (2015),
Modeling the finger instability in an expanding cell monolayer,
Integr. Biol., 7:1218-27,
pdf , Supplementary Information pdf
M. Santolini, T. Mora and V. Hakim (2014),
A General Pairwise Interaction Model Provides an Accurate Description of
In Vivo Transcription Factor Binding Sites
PLoS ONE 9(6):e99015. doi: 10.1371/journal.pone.0099015
, full text.
M. Deforet, V. Hakim, H. Yevick, G. Duclos and P. Silberzan (2014),
Emergence of collective modes and tri-dimensional structures from epithelial
confinement
Nat Commun. 5 :3747
pdf , Supplementary Information pdf
H. Rouault, M. Santolini, F. Schweisguth and V. Hakim (2014),
Imogene: identification of motifs and cis-regulatory modules underlying gene
co-regulation,
Nucl. Acids Res. doi: 10.1093/nar/gku209
full text ,
Imogene web interface ,
computer code
N. Sepúlveda, L. Petitjean, O. Cochet, E. Grasland-Mongrain, P. Silberzan, V. Hakim (2013),
Collective cell motion in an epithelial sheet can be quantitatively described by a stochastic interacting particle model,
PLoS Comput Biol. 2013;9(3):e1002944. doi: 10.1371/journal.pcbi.1002944 ,
correction
H. Rouault, V. Hakim (2012),
Different cell fates from cell-cell interactions: core architectures of two-cell bistable networks,
Biophys J 102, 417-426,
pdf , Supplementary Information pdf
H. Rouault, K. Mazouni, L. Couturier, V. Hakim and F. Schweisguth (2010),
Genome-wide identification of cis-regulatory motifs and modules underlying
gene coregulation using statistics and phylogeny,
Proc. Natl. Acad. Sci. USA 107, 14615-14620,
pdf , Supplementary Information pdf
P. Francois, V. Hakim and E.D. Siggia (2007),
Deriving structure from evolution: metazoan segmentation,
Mol. Syst. Biol 3:154,
pdf , Supplementary Information pdf
P. Francois and V. Hakim (2005), Core genetic module : the mixed feedback
loop,
Phys. Rev. E 72, 031908
pdf
P. Francois and V. Hakim (2004), Design of genetic networks with specified
functions by evolution in silico ,
Proc. Natl. Acad. Sci. USA 101, 580-585
pdf ,
Supporting information pdf
V. Hakim and A. Karma (2009),
Laws of crack motion and phase-field models of fracture,
J. Mech. Phys Solids. 57, 342
pdf
B. Echebarria, V. Hakim and H. Henry (2006),
Non-equilibrium ribbon model of twisted scroll waves,
Phys. Rev. Lett. 96, 098301
pdf, Auxiliary Material
pdf
V. Hakim and A. Karma (2005),
Crack path prediction in anisotropic brittle materials,
Phys. Rev. Lett. 95, 235501
pdf
H. Henry and V. Hakim (2002),
Scroll waves in isotropic excitable media: Linear instabilities, bifurcations
and restabilized states,
Phys. Rev. E65, 046235-1/21
ps
M. Haddad and V. Hakim (2001),
Superfluidity at supersonic speed?,
Phys. Rev. Lett. 87, 218901
pdf
V. Hakim and A. Karma (1999),
Theory of spiral wave dynamics in weakly excitable media: asymptotic
reduction to a kinematic model and applications,
Phys. Rev. E 60, 5073-5105
ps
V. Hakim and A. Karma (1997),
Spiral Wave Meander in
Excitable Media: The Large
Core Limit,
Phys. Rev. Lett. 79, 665-669
ps
V. Hakim (1997), Nonlinear Schrodinger flow past an obstacle in one
dimension,
Phys. Rev. E55, 2835-2845
ps